Publication Details

A flexible technique for the automatic design of approximate string matching architectures

MARTÍNEK, T.; LEXA, M.; KOŘENEK, J.; FUČÍK, O. A flexible technique for the automatic design of approximate string matching architectures. In Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop. Praha: IEEE Computer Society, 2006. p. 83-84. ISBN: 1-4244-0184-4.
Czech title
Flexibilní technika pro automatické navrhování architektur pro hledání podobnosti řetězců
Type
conference paper
Language
English
Authors
Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Lexa Matej, Ing., Ph.D. (DFIT-Dean)
Kořenek Jan, doc. Ing., Ph.D. (DCSY)
Fučík Otto, doc. Dr. Ing. (DCSY)
Keywords

Appriximate string matching, Systolic array architecture, FPGA, DNA sequence analysis

Abstract

Systolic array architectures for approximate string matching play a significant role as hardware accelerators in biological applications. However, their wider use is limited by the lack of flexibility required by often variable tasks. In this respect, it is desirable to develop a procedure for automatic design and implementation of such accelerators to reach high performance and efficiency with as little human effort on the side of the designer as possible. This paper proposes the essential element of such procedure, a method for the calculation of generic systolic array parameters with respect to maximal performance and efficient resource utilization.

Published
2006
Pages
83–84
Proceedings
Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop
ISBN
1-4244-0184-4
Publisher
IEEE Computer Society
Place
Praha
BibTeX 
@inproceedings{BUT22395,
  author="Tomáš {Martínek} and Matej {Lexa} and Jan {Kořenek} and Otto {Fučík}",
  title="A flexible technique for the automatic design of approximate string matching architectures",
  booktitle="Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop",
  year="2006",
  pages="83--84",
  publisher="IEEE Computer Society",
  address="Praha",
  isbn="1-4244-0184-4"
}
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