Project Details

Návrh, optimalizace a evaluace aplikačně specifických počítačových systémů

Project Period: 1. 3. 2020 – 28. 2. 2023

Project Type: grant

Code: FIT-S-20-6309

Agency: Brno University of Technology

Program: Vnitřní projekty VUT

Type
grant
Abstract

Aplikačně specifické počítačové systémy je vhodné navrhovat pokud možno plně automatizovanými metodami, které vedou na vysoce optimalizovaná obvodová i programová řešení, která je možné bezproblémově paralelizovat (s cílem maximalizovat výkonnost) či aproximovat (s cílem snížit příkon). Cílem projektu je navrhnout a na typických aplikacích ověřit nové algoritmy a výpočetní platformy uplatnitelné při návrhu, optimalizaci a realizaci vysoce aplikačně specifických výpočetních systémů.

Team members
Sekanina Lukáš, prof. Ing., Ph.D. (DCSY) – research leader
Bardonek Petr, Ing. (DCSY)
Bidlo Michal, doc. Ing., Ph.D. (DCSY)
Bordovský Gabriel, Ing.
Budiský Jakub, Ing.
Crha Adam, Ing., Ph.D. (RG POLY)
Čekan Ondřej, Ing., Ph.D. (UFYZ)
Drahošová Michaela, Ing., Ph.D. (DCSY)
Fučík Otto, doc. Dr. Ing. (DCSY)
Fukač Tomáš, Ing. (DCSY)
Hodaň David, Ing.
Husa Jakub, Ing. (DCSY)
Jaroš Jiří, doc. Ing., Ph.D. (DCSY)
Jaroš Marta, Ing., Ph.D. (DCSY)
Kadlubiak Kristián, Ing. (DCSY)
Kekely Lukáš, Ing., Ph.D. (DCSY)
Kekely Michal, Ing.
Kešner Filip, Ing.
Kocnová Jitka, Ing. (RG EHW)
Krčma Martin, Ing., Ph.D. (UFYZ)
Kučera Jan, Ing. (DCSY)
Lojda Jakub, Ing., Ph.D. (DCSY)
Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Matoušek Denis, Ing.
Mrázek Vojtěch, Ing., Ph.D. (DCSY)
Nevoral Jan, Ing., Ph.D. (DCSY)
Orsák Michal, Ing. (DCSY)
Pánek Richard, Ing. (DCSY)
Podivínský Jakub, Ing., Ph.D. (UFYZ)
Růžička Richard, doc. Ing., Ph.D., MBA (DCSY)
Smatana Stanislav, Ing.
Strnadel Josef, Ing., Ph.D. (DCSY)
Szurman Karel, Ing., Ph.D.
Šimek Václav, Ing. (DCSY)
Tisovčík Peter, Ing.
Vašíček Zdeněk, doc. Ing., Ph.D. (DCSY)
Vaverka Filip, Ing., Ph.D.
Vrána Roman, Ing.
Zachariášová Marcela, Ing., Ph.D. (DCSY)
Publications

2023

  • JAROŠ, M.; JAROŠ, J. Optimization of Execution Parameters of Moldable Ultrasound Workflows Under Incomplete Performance Data. In Job Scheduling Strategies for Parallel Processing. JSSPP 2022. Lecture Notes in Computer Science, LNCS 13592. Virtual Event: Springer Nature Switzerland AG, 2023. p. 152-171. ISBN: 978-3-031-22697-7. Detail

2022

  • AUBRY, J.; BATES, O.; BOEHM, C.; PAULY, K.; CHRISTENSEN, D.; CUETO, C.; GÉLAT, P.; GUASCH, L.; JAROŠ, J.; JING, Y.; JONES, R.; LI, N.; MARTY, P.; MONTANARO, H.; NEUFELD, E.; PICHARDO, S.; PINTON, G.; PULKKINEN, A.; STANZIOLA, A.; THIELSCHER, A.; TREEBY, B.; VAN 'T WOUT, E. Benchmark problems for transcranial ultrasound simulation: Intercomparison of compressional wave models. Journal of the Acoustical Society of America, 2022, vol. 152, no. 2, p. 1003-1019. ISSN: 1520-8524. Detail
  • JAROŠ, M.; JAROŠ, J. k-Dispatch's Performance Modules for Advanced Workflow Submission. Soláň: 2022. p. 0-0. Detail
  • JAROŠ, M.; TREEBY, B.; JAROŠ, J. k-Plan: from the Hospital to the Cluster and back. Ostrava: 2022. p. 0-0. Detail
  • JAWED, S.; MALIK, A. Deep learning based diagnosis of alcohol use disorder (AUD) using EEG. In {2022 IEEE 12th International Conference on Consumer Electronics (ICCE-Berlin). Berlin: Institute of Electrical and Electronics Engineers, 2022. p. 1-5. ISBN: 978-1-6654-5676-0. Detail
  • KALKREUTH, R.; DAL PICCOL SOTTO, L.; VAŠÍČEK, Z. Graph-based Genetic Programming. In GECCO 2022 Companion - Proceedings of the 2022 Genetic and Evolutionary Computation Conference. Boston: Association for Computing Machinery, 2022. p. 958-982. ISBN: 978-1-4503-9268-6. Detail
  • KLEPÁRNÍK, P.; ZEMČÍK, P.; TREEBY, B.; JAROŠ, J. On-the-Fly Calculation of Time-Averaged Acoustic Intensity in Time-Domain Ultrasound Simulations Using a k-Space Pseudospectral Method. IEEE TRANSACTIONS ON ULTRASONICS FERROELECTRICS AND FREQUENCY CONTROL, 2022, vol. 69, no. 10, p. 2917-2929. ISSN: 1525-8955. Detail
  • KUNKA, A.; LACKO, D.; ŠTOURAČ, J.; DAMBORSKÝ, J.; PROKOP, Z.; MAZURENKO, S. CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability. Nucleic Acids Research, 2022, vol. 50, no. 1, p. 145-151. ISSN: 1362-4962. Detail
  • OLŠÁK, O.; JAROŠ, J. Comparison of SpFFT and FFTW3 library. Soláň: 2022. p. 0-0. Detail
  • QADRI, S.; ARIF, M.; NASEEM, I.; MOINUDDIN, M. Robust Incremental Least Mean Square Algorithm With Dynamic Combiner. IEEE Access, 2022, vol. 10, no. 10, p. 75135-75143. ISSN: 2169-3536. Detail
  • RŮŽIČKA, R.; ŠIMEK, V. Technology Mapping for PAIG Optimized Polymorphic Circuits. In Proceeding of 25th Euromicro Conference on Digital System Design 2022 (DSD'22). Gran Canaria: IEEE Computer Society, 2022. p. 801-808. ISBN: 978-1-6654-7404-7. Detail
  • SEKANINA, L.; VAŠÍČEK, Z.; MRÁZEK, V. Inexact Arithmetic Operators. In Approximate Computing Techniques. Cham: Springer International Publishing, 2022. p. 81-107. ISBN: 978-3-030-94704-0. Detail
  • STRNADEL, J. Analyzing Dynamic Aspects of AxC Systems by Means of Statistical Model Checking. In Proceedings of 2022 25th International Symposium on Design and Diagnostics of Electronic Circuits and Systems (DDECS). Prague: Institute of Electrical and Electronics Engineers, 2022. p. 88-93. ISBN: 978-1-6654-9431-1. Detail
  • VÁLEK, M.; SEKANINA, L. Evolutionary Approximation in Non-Local Means Image Filters. In 2022 IEEE International Conference on Systems, Man, and Cybernetics (SMC). Praha: Institute of Electrical and Electronics Engineers, 2022. p. 2759-2766. ISBN: 978-1-6654-5258-8. Detail

2021

  • BARBARESCHI, M.; BOSIO, A.; SEKANINA, L.; BRAUN, C. Editorial: Special issue on Advancing on Approximate Computing: Methodologies, Architectures and Algorithms. Future Generation Computer Systems-The International Journal of Grid Computing Theory Methods and Applications. 2021. p. 54-55. ISSN: 0167-739X. Detail
  • ČEJKA, T.; HYNEK, K.; SOUKUP, D.; TISOVČÍK, P. Towards Evaluating Quality of Datasets for Network Traffic Domain. In Proceedings of the 17th International Conference on Network Service Management (CNSM 2021). Izmir: Institute of Electrical and Electronics Engineers, 2021. p. 264-268. ISBN: 978-3-903176-36-2. Detail
  • CHLEBÍK, J.; JAROŠ, J. Distributed Evolutionary Design of HIFU Treatment Plans. GECCO 2021 Companion - Proceedings of the 2021 Genetic and Evolutionary Computation Conference Companion. Lille: Association for Computing Machinery, 2021. p. 297-298. ISBN: 978-1-4503-8351-6. Detail
  • FUKAČ, T.; KOŘENEK, J.; MATOUŠEK, J. Scalability of Hash-based Pattern Matching for High-speed Network Security and Monitoring. In Proceedings - IEEE Symposium on Computers and Communications. Athens: Institute of Electrical and Electronics Engineers, 2021. p. 1-6. ISBN: 978-1-6654-2744-9. Detail
  • FUKAČ, T.; MATOUŠEK, J.; KOŘENEK, J.; KEKELY, L. Increasing Memory Efficiency of Hash-Based Pattern Matching for High-Speed Networks. In 2021 International Conference on Field-Programmable Technology, ICFPT 2021. Auckland: Institute of Electrical and Electronics Engineers, 2021. p. 185-193. ISBN: 978-1-6654-2010-5. Detail
  • JAROŠ, M.; JAROŠ, J. k-Dispatch's Performance Modules for Advanced Workflow Submission. 5th Users' Conference of IT4Innovations. Ostrava: 2021. p. 0-0. Detail
  • JAROŠ, M.; SASÁK, T.; TREEBY, B.; JAROŠ, J. Estimation of Execution Parameters for k-Wave Simulations. In High Performance Computing in Science and Engineering. HPCSE 2019. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Cham: Springer Nature Switzerland AG, 2021. p. 116-134. ISBN: 978-3-030-67076-4. Detail
  • JAROŠ, M.; TREEBY, B.; JAROŠ, J. Adaptive Execution Planning in Biomedical Workflow Management Systems. The Platform for Advanced Scientific Computing (PASC) Conference 2021. Geneva: 2021. p. 0-0. Detail
  • KOŘENEK, J.; VRÁNA, R. Efficient Acceleration of Decision Tree Algorithms for Encrypted Network Traffic Analysis. In Proceedings - 2021 24th International Symposium on Design and Diagnostics of Electronic Circuits and Systems, DDECS 2021. IEEE International Symposium on Design and Diagnostics of Electronic Circuits & Systems. Vídeň: Institute of Electrical and Electronics Engineers, 2021. p. 115-118. ISBN: 978-1-6654-3595-6. Detail
  • LOJDA, J.; PÁNEK, R.; KOTÁSEK, Z. Automatic Design of Fault-Tolerant Systems for VHDL and SRAM-based FPGAs. In Proceedings - 2021 24th Euromicro Conference on Digital System Design, DSD 2021. Palermo: Institute of Electrical and Electronics Engineers, 2021. p. 549-552. ISBN: 978-1-6654-2703-6. Detail
  • LOJDA, J.; PÁNEK, R.; KOTÁSEK, Z. Automatically-Designed Fault-Tolerant Systems: Failed Partitions Recovery. In 2021 IEEE East-West Design and Test Symposium, EWDTS 2021 - Proceedings. Batumi: Institute of Electrical and Electronics Engineers, 2021. p. 26-33. ISBN: 978-1-6654-4503-0. Detail
  • LOJDA, J.; PÁNEK, R.; PODIVÍNSKÝ, J.; ČEKAN, O.; KRČMA, M.; KOTÁSEK, Z. Testing Embedded Software Through Fault Injection: Case Study on Smart Lock. In 2021 IEEE 22nd Latin American Test Symposium, LATS 2021. Punta del Este: Institute of Electrical and Electronics Engineers, 2021. p. 80-85. ISBN: 978-1-6654-2057-0. Detail
  • LOJDA, J.; PODIVÍNSKÝ, J.; ČEKAN, O.; KOTÁSEK, Z. Accelerating Tests of Arithmetic Circuits Through On-FPGA Stimuli Generation and Their Reduction. In International Conference on Electrical, Computer, Communications and Mechatronics Engineering, ICECCME 2021. Mauritius: Institute of Electrical and Electronics Engineers, 2021. p. 1628-1633. ISBN: 978-1-6654-1262-9. Detail
  • PÁNEK, R.; LOJDA, J.; PODIVÍNSKÝ, J.; KOTÁSEK, Z. Reliability Analysis of the FPGA Control System with Reconfiguration Hardening. In Proceedings - 2021 24th Euromicro Conference on Digital System Design, DSD 2021. Palermo: Institute of Electrical and Electronics Engineers, 2021. p. 553-556. ISBN: 978-1-6654-2703-6. Detail
  • SHAFIQUE, M.; STEININGER, A.; SEKANINA, L.; KRSTIĆ, M.; STOJANOVIC, G.; MRÁZEK, V. 24th International Symposium on Design and Diagnostics of Electronic Circuits & Systems. USA: Institute of Electrical and Electronics Engineers, 2021. p. 0-0. ISBN: 978-1-6654-3595-6. Detail
  • ZWINSOVÁ, B.; PETROV, V.; HRIVŇÁKOVÁ, M.; SMATANA, S.; MICENKOVÁ, L.; KAZDOVÁ, N.; POPOVICI, V.; HRSTKA, R.; ŠEFR, R.; BENCSIKOVÁ, B.; ZDRAŽILOVÁ-DUBSKÁ, L.; BRYCHTOVÁ, V.; NENUTIL, R.; VÍDEŇSKÁ, P.; BUDINSKÁ, E. Colorectal tumour mucosa microbiome is enriched in oral pathogens and defines three subtypes that correlate with markers of tumour progression. Cancers, 2021, vol. 13, no. 19, p. 1-25. ISSN: 2072-6694. Detail

2020

  • ADAMOVSKÝ, O.; BOYDA, J.; CRAFT, S.; GINN, P.; HUA, Q.; KOZUCH, M.; SCHMIDT, J.; SMATANA, S.; VESPALCOVÁ, H.; PERSICO, M.; BISESI, J.; BUDINSKÁ, E.; MARTYNIUK, C. Microbiome analysis and predicted relative metabolomic turnover suggest bacterial heme and selenium metabolism are altered in the gastrointestinal system of zebrafish (Danio rerio) exposed to the organochlorine dieldrin. ENVIRONMENTAL POLLUTION, 2020, vol. 2021, no. 268, p. 115715-115726. ISSN: 1873-6424. Detail
  • ADAMOVSKÝ, O.; BUERGER, A.; VESPALCOVÁ, H.; SOHAG, S.; HANLON, A.; GINN, P.; CRAFT, S.; SMATANA, S.; BUDINSKÁ, E.; PERSICO, M.; BISESI, J.; MARTYNIUK, C. Evaluation of microbiome-host relationships in the zebrafish gastrointestinal system reveals adaptive immunity is a target of bis(2-ethylhexyl) phthalate (DEHP) exposure. Environmental Science and Technology, 2020, vol. 54, no. 9, p. 5719-5728. ISSN: 1520-5851. Detail
  • BIDLO, M.; ŽUFAN, P. On Comparison of Some Representations for the Evolution of Quantum Operators. In 2020 IEEE Symposium Series on Computational Intelligence, SSCI 2020. Canberra: Institute of Electrical and Electronics Engineers, 2020. p. 2101-2108. ISBN: 978-1-7281-2547-3. Detail
  • COLUCCI, A.; MARCHISIO, A.; BUSSOLINO, B.; MRÁZEK, V.; MARTINA, M.; MASERA, G.; SHAFIQUE, M. A Fast Design Space Exploration Framework for the Deep Learning Accelerators: Work-in-Progress. In 2020 International Conference on Hardware/Software Codesign and System Synthesis (CODES+ISSS)}. Singapore: Institute of Electrical and Electronics Engineers, 2020. p. 34-36. ISBN: 978-1-7281-9198-0. Detail
  • CRHA, A.; ŠIMEK, V.; RŮŽIČKA, R. Multi-output cuts influence on optimization of polymorphic circuits based on PAIG rewriting. In 2020 23rd International Symposium on Design and Diagnostics of Electronic Circuits & Systems (DDECS). Novi Sad: Institute of Electrical and Electronics Engineers, 2020. p. 1-6. ISBN: 978-1-7281-9938-2. Detail
  • FUKAČ, T.; KOŠAŘ, V.; KOŘENEK, J.; MATOUŠEK, J. Increasing Throughput of Intrusion Detection Systems by Hash-Based Short String Pre-Filter. In Proceedings - Conference on Local Computer Networks, LCN. Sydney (virtual): Institute of Electrical and Electronics Engineers, 2020. p. 509-514. ISBN: 978-1-7281-7158-6. Detail
  • HU, T.; NICOLAU, M.; SEKANINA, L. Special issue on highlights of genetic programming 2019 events. Genetic Programming and Evolvable Machines. 2020. p. 283-285. ISSN: 1389-2576. Detail
  • KUČERA, J.; BEN BASAT, R.; KUKA, M.; ANTICHI, G.; YU, M.; MITZENMACHER, M. Detecting Routing Loops in the Data Plane. In CoNEXT 2020 - Proceedings of the 16th International Conference on Emerging Networking EXperiments and Technologies. New York, NY: Association for Computing Machinery, 2020. p. 466-473. ISBN: 978-1-4503-7948-9. Detail
  • LOJDA, J.; PÁNEK, R.; PODIVÍNSKÝ, J.; ČEKAN, O.; KRČMA, M.; KOTÁSEK, Z. Analysis of Software-Implemented Fault Tolerance: Case Study on Smart Lock. In 2020 IEEE East-West Design and Test Symposium, EWDTS 2020 - Proceedings. Varna: Institute of Electrical and Electronics Engineers, 2020. p. 24-28. ISBN: 978-1-7281-9899-6. Detail
  • LOJDA, J.; PÁNEK, R.; PODIVÍNSKÝ, J.; ČEKAN, O.; KRČMA, M.; KOTÁSEK, Z. Hardening of Smart Electronic Lock Software against Random and Deliberate Faults. In Proceedings - Euromicro Conference on Digital System Design, DSD 2020. Kranj: Institute of Electrical and Electronics Engineers, 2020. p. 680-683. ISBN: 978-1-7281-9535-3. Detail
  • LOJDA, J.; PODIVÍNSKÝ, J.; ČEKAN, O.; PÁNEK, R.; KRČMA, M.; KOTÁSEK, Z. Automatic Design of Reliable Systems Based on the Multiple-choice Knapsack Problem. In Proceedings - 2020 23rd International Symposium on Design and Diagnostics of Electronic Circuits and Systems, DDECS 2020. Novi Sad: Institute of Electrical and Electronics Engineers, 2020. p. 1-4. ISBN: 978-1-7281-9938-2. Detail
  • NEVORAL, J.; ŠIMEK, V.; RŮŽIČKA, R. Power Consumption Analysis of New Generation of Polymorphic Gates. In 23rd International Symposium on Design and Diagnostics of Electronic Circuits and Systems, DDECS 2020. Novi Sad: Institute of Electrical and Electronics Engineers, 2020. p. 1-6. ISBN: 978-1-7281-9938-2. Detail
  • PÁNEK, R.; LOJDA, J.; PODIVÍNSKÝ, J.; KOTÁSEK, Z. Reliability Analysis of Reconfiguration Controller for FPGA-Based Fault Tolerant Systems: Case Study. In 2020 International Symposium on VLSI Design, Automation, and Test (VLSI-DAT) : proceedings of technical papers. Hsinchu: IEEE Computer Society, 2020. p. 121-124. ISBN: 978-1-7281-6083-2. Detail
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