Publication Details

Expression and regulation of transposable elements in the dioecious plant Silene latifolia

VOGEL, I. Expression and regulation of transposable elements in the dioecious plant Silene latifolia. GENOME BIOL EVOL, 2014, vol. 2014, no. 1, p. 1-13. ISSN: 1759-6653.
Czech title
Exprese a regulace transpozonů v dvoudomé rastlině Silene latifolia
Type
journal article
Language
English
Authors
Vogel Ivan, Ing., Ph.D.
Keywords

transposable elements, Silene latifolia, expression  

Abstract

Gypsy and Copia LTR retrotransposons dominate genome of the dioecious plantSilene latifolia. In this study, we measured in-silico the transcription of various transposable element (TE) families in different organs using NGS data. We found that the most expressed TE families were Athila and Tekay/Del (both are Gypsy elements) and Angela (Copia element).  The study furthermore deals with small noncoding RNAs in transposable elements and potencial correlation between transposon activity and small RNA abundance.

Published
2014
Pages
1–13
Journal
GENOME BIOL EVOL, vol. 2014, no. 1, ISSN 1759-6653
BibTeX 
@article{BUT111607,
  author="Ivan {Vogel}",
  title="Expression and regulation of transposable elements in the dioecious plant Silene latifolia",
  journal="GENOME BIOL EVOL",
  year="2014",
  volume="2014",
  number="1",
  pages="1--13",
  issn="1759-6653",
  url="https://www.fit.vut.cz/research/publication/10653/"
}
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