Detail projektu
Photoacoustic/Ultrasound Mammoscopy for evaluating screening-detected lesions in the breast
Období řešení: 1. 1. 2017 - 30. 6. 2021
Typ projektu: grant
Kód: PAMMOTH, PAMMOTH
Agentura: Evropská komise EU
Program: Společná technologická iniciativa ECSEL
Název česky
Fotoakustická/ultrazvuková mamoskopie pro dektekci lézí v prsou
Typ
grant
Abstrakt
Cílem projektu PAMMOTH je vyvinout, validovat a uvést do praxe nový přístroj pro neinvazivní screening prsou s cílem o včasnou diagnozu rakoviny prsou. Navržené zařízení kombinuje 3D fotoakustické snímkování a laserem indukované ultrazvukové snímkování. Cílem je dosáhnout vysoké přesnosti detekce v reálném čase.
Řešitelé
Jaroš Jiří, doc. Ing., Ph.D.
(UPSY FIT VUT)
, hlavní řešitel
Bordovský Gabriel, Ing. (UPSY FIT VUT) , spoluřešitel
Budiský Jakub, Ing. (UPSY FIT VUT) , spoluřešitel
Čudová Marta, Ing. (UPSY FIT VUT) , spoluřešitel
Jaroš Marta, Ing., PhD. (UPSY FIT VUT) , spoluřešitel
Kadlubiak Kristián, Ing. (UPSY FIT VUT) , spoluřešitel
Vaverka Filip, Ing. (UPSY FIT VUT) , spoluřešitel
Bordovský Gabriel, Ing. (UPSY FIT VUT) , spoluřešitel
Budiský Jakub, Ing. (UPSY FIT VUT) , spoluřešitel
Čudová Marta, Ing. (UPSY FIT VUT) , spoluřešitel
Jaroš Marta, Ing., PhD. (UPSY FIT VUT) , spoluřešitel
Kadlubiak Kristián, Ing. (UPSY FIT VUT) , spoluřešitel
Vaverka Filip, Ing. (UPSY FIT VUT) , spoluřešitel
Publikace
2021
- PHAM Khoa, NOIMARK Sacha, HUYNH Nam, ZHANG Edward, KUKLIŠ Filip, JAROŠ Jiří, DESJARDINS Adrien, COX Ben T. a BEARD Paul. Broadband all-optical plane-wave ultrasound imaging system based on a Fabry-Perot scanner. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, roč. 68, č. 4, 2021, s. 1007-1016. ISSN 1525-8955. Detail
- JAROŠ Marta, SASÁK Tomáš, TREEBY Bradley E. a JAROŠ Jiří. Estimation of Execution Parameters for k-Wave Simulations. In: High Performance Computing in Science and Engineering. HPCSE 2019. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Cham: Springer Nature Switzerland AG, 2021, s. 116-134. ISBN 978-3-030-67076-4. Detail
- VAVERKA Filip, TREEBY Bradley E. a JAROŠ Jiří. Performance Evaluation of Pseudospectral Ultrasound Simulations on a Cluster of Xeon Phi Accelerators. In: High Performance Computing in Science and Engineering. HPCSE 2019. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Cham: Springer Nature Switzerland AG, 2021, s. 99-115. ISBN 978-3-030-67076-4. Detail
- JAROŠ Marta a JAROŠ Jiří. Performance-Cost Optimization of Moldable Scientific Workflows. In: Job Scheduling Strategies for Parallel Processing. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Portland, Oregon USA: Springer International Publishing, 2021, s. 149-167. ISBN 978-3-030-88223-5. ISSN 0302-9743. Detail
2020
- MARTIN Eleanor, JAROŠ Jiří a TREEBY Bradley E. Experimental Validation of k-Wave: Nonlinear Wave Propagation in Layered, Absorbing Fluid Media. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, roč. 67, č. 1, 2020, s. 81-91. ISSN 1525-8955. Detail
- JAROŠ Marta, TREEBY Bradley E., GEORGIOU Panayiotis a JAROŠ Jiří. k-Dispatch: A Workflow Management System for the Automated Execution of Biomedical Ultrasound Simulations on Remote Computing Resources. In: Proceedings of the Platform for Advanced Scientific Computing Conference, PASC 2020. New York: Association for Computing Machinery, 2020, s. 1-10. ISBN 978-1-4503-7993-9. Detail
- JAROŠ Marta, KLUSÁČEK Dalibor a JAROŠ Jiří. Optimizing Biomedical Ultrasound Workflow Scheduling Using Cluster Simulations. In: Job Scheduling Strategies for Parallel Processing. JSSPP 2020. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), roč. 12326. New Orleans: Springer Nature Switzerland AG, 2020, s. 68-84. ISBN 978-3-030-63170-3. Detail
2019
- JAROŠ Marta, TREEBY Bradley E. a JAROŠ Jiří. Adaptive Execution Planning in Biomedical Workflow Management Systems. Ostrava, 2019. Detail
- JAROŠ Marta, JAROŠ Jiří a TREEBY Bradley E. Adaptive Execution Planning in Workflow Management Systems. Denver, 2019. Detail
- VAVERKA Filip, TREEBY Bradley E. a JAROŠ Jiří. Advancements in Ultrasound Simulations Enabled by High-bandwidth GPU Interconnects. Denver, 2019. Detail
- VAVERKA Filip, TREEBY Bradley E. a JAROŠ Jiří. Evaluation of the Suitability of Intel Xeon Phi Clusters for the Simulation of Ultrasound Wave Propagation using Pseudospectral Methods. In: 19th International Conference on Computational Science 2019, Faro, Portugal, June 12-14, 2019. Lecture Notes in Computer Science, roč. 11538. Faro: Springer International Publishing, 2019, s. 577-590. ISBN 978-3-030-22743-2. Detail
- BORDOVSKÝ Gabriel a JAROŠ Jiří. On the Complexity of Photoacoustic Tomography: A Trade-off Between Image Quality and Computational Cost. Solaň, 2019. Detail
- BORDOVSKÝ Gabriel. Photoacoustic Reconstruction with Progressive Grid Refinement. Ostrava, 2019. Detail
- WISE Elliott S., COX Ben T., JAROŠ Jiří a TREEBY Bradley E. Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods. Journal of the Acoustical Society of America, roč. 146, č. 1, 2019, s. 278-288. ISSN 1520-8524. Detail
- JAROŠ Marta, TREEBY Bradley E. a JAROŠ Jiří. Scientific workflow management framework. Soláň, 2019. Detail
2018
- ČUDOVÁ Marta, TREEBY Bradley E. a JAROŠ Jiří. Design of HIFU treatment plans using an evolutionary strategy. In: GECCO 2018 Companion - Proceedings of the 2018 Genetic and Evolutionary Computation Conference Companion. Kyoto: Association for Computing Machinery, 2018, s. 1568-1575. ISBN 978-1-4503-5764-7. Detail
- JAROŠ Marta, TREEBY Bradley E. a JAROŠ Jiří. Design of HIFU Treatment Plans using an Evolutionary Strategy. Ostrava, 2018. Detail
- KLEPÁRNÍK Petr, ZEMČÍK Pavel a JAROŠ Jiří. Efficient Lossy Compression of Ultrasound Data. In: 2017 IEEE International Symposium on Signal Processing and Information Technology, ISSPIT 2017. Bilbao: Institute of Electrical and Electronics Engineers, 2018, s. 232-237. ISBN 978-1-5386-4662-5. Detail
- KLEPÁRNÍK Petr, BAŘINA David, ZEMČÍK Pavel a JAROŠ Jiří. Efficient Low-Resource Compression of HIFU Data. Information, roč. 9, č. 7, 2018, s. 1-14. ISSN 2078-2489. Detail
- KADLUBIAK Kristián, TREEBY Bradley E. a JAROŠ Jiří. Fourth-order Time-stepping Scheme in Simulation of Ultrasound Propagation. Ostrava, 2018. Detail
- KADLUBIAK Kristián, JAROŠ Jiří a TREEBY Bradley E. GPU-accelerated Simulation of Elastic Wave Propagation. Frankfurt am Main, 2018. Detail
- KADLUBIAK Kristián, JAROŠ Jiří a TREEBY Bradley E. GPU-Accelerated simulation of elastic wave propagation. In: Proceedings - 2018 International Conference on High Performance Computing and Simulation, HPCS 2018. Orleans: IEEE Computer Society, 2018, s. 188-195. ISBN 978-1-5386-7878-7. Detail
- BORDOVSKÝ Gabriel. Challenges In the Computer Photoacoustic Tomograpy Using the k-Wave Toolbox. In: Počítačové architektúry & diagnostika PAD 2018. Plzeň: Západočeská univerzita v Plzni, 2018, s. 49-52. ISBN 978-80-261-0814-6. Detail
- VAVERKA Filip, ŠPEŤKO Matej, TREEBY Bradley E. a JAROŠ Jiří. Optimization of Ultrasound Simulations on Multi-GPU Servers. Dallas, 2018. Detail
- TREEBY Bradley E., VAVERKA Filip a JAROŠ Jiří. Performance and Accuracy Analysis of Nonlinear k-Wave Simulations Using Local Domain Decomposition with an 8-GPU Server. Proceedings of Meetings on Acoustics, roč. 34, č. 1, 2018, s. 1-5. ISSN 1939-800X. Detail
- BORDOVSKÝ Gabriel, COX Ben T. a JAROŠ Jiří. Photoacoustic Tomography Using the k-Wave Toolbox. Ostrava, 2018. Detail
- VAVERKA Filip, TREEBY Bradley E. a JAROŠ Jiří. Running Large-Scale Ultrasound Simulations on Intel Xeon Phi (KNC) accelerators. Ostrava, 2018. Detail
- DANTUMA Maura, LUCKA Felix, TREEBY Bradley E., JAROŠ Jiří, COX Ben T. a MANOHAR Srirang. Signal Frequency Content and Appearance of Tumors in Photoacoustic Breast Tomography: A Simulation. Caparica, 2018. Detail
2017
- ČUDOVÁ Marta a JAROŠ Jiří. Framework for Planning, Executing and Monitoring Cooperating Computations. Ostrava, 2017. Detail
- JAROŠ Jiří. High Performance Computing in Ultrasound Cancer Treatment. Brno, 2017. Detail
- VAVERKA Filip, TREEBY Bradley E. a JAROŠ Jiří. Running Large-Scale Ultrasound Simulations on 256 Salomon Nodes. Ostrava, 2017. Detail
- VAVERKA Filip, TREEBY Bradley E. a JAROŠ Jiří. Running Large-Scale Ultrasound Simulations on Piz Daint with 512 Pascal GPUs. Denver, 2017. Detail
- TREEBY Bradley E., BUDISKÝ Jakub, WISE Elliott S., JAROŠ Jiří a COX Ben T. Single-step Calculation of the Acoustic Field from Arbitrary Continuous-wave Sources. Ostrava, 2017. Detail
Produkty
2020
- C++ implementace projektu k-Wave verze 1.3, software, 2020
Autoři: Jaroš Jiří, Treeby Bradley E., Cox Ben T., Kukliš Filip Detail - C++ implementace rychlého výpočtu akustického pole v k-Wave 1.3, software, 2020
Autoři: Budiský Jakub, Treeby Bradley E., Jaroš Jiří Detail - CUDA implementace projektu k-Wave verze 1.3, software, 2020
Autoři: Jaroš Jiří, Treeby Bradley E. Detail