Publication Details

A flexible technique for the automatic design of approximate string matching architectures

MARTÍNEK, T.; LEXA, M.; KOŘENEK, J.; FUČÍK, O. A flexible technique for the automatic design of approximate string matching architectures. In Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop. Praha: IEEE Computer Society, 2006. p. 83-84. ISBN: 1-4244-0184-4.
Czech title
Flexibilní technika pro automatické navrhování architektur pro hledání podobnosti řetězců
Type
conference paper
Language
English
Authors
Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Lexa Matej, Ing., Ph.D. (DCSY)
Kořenek Jan, doc. Ing., Ph.D. (DCSY)
Fučík Otto, doc. Dr. Ing. (DCSY)
Keywords

Appriximate string matching, Systolic array architecture, FPGA, DNA sequence
analysis

Abstract

Systolic array architectures for approximate string matching play a significant
role as hardware accelerators in biological applications. However, their wider
use is limited by the lack of flexibility required by often variable tasks. In
this respect, it is desirable to develop a procedure for automatic design and
implementation of such accelerators to reach high performance and efficiency with
as little human effort on the side of the designer as possible. This paper
proposes the essential element of such procedure, a method for the calculation of
generic systolic array parameters with respect to maximal performance and
efficient resource utilization.

Published
2006
Pages
83–84
Proceedings
Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop
Conference
IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop, Praha, CZ
ISBN
1-4244-0184-4
Publisher
IEEE Computer Society
Place
Praha
DOI
10.1109/DDECS.2006.1649579
UT WoS
000238973400021
BibTeX 
@inproceedings{BUT22395,
  author="Tomáš {Martínek} and Matej {Lexa} and Jan {Kořenek} and Otto {Fučík}",
  title="A flexible technique for the automatic design of approximate string matching architectures",
  booktitle="Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop",
  year="2006",
  pages="83--84",
  publisher="IEEE Computer Society",
  address="Praha",
  doi="10.1109/DDECS.2006.1649579",
  isbn="1-4244-0184-4"
}
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