Product Details
pqsfinder: an R/Bioconductor package for identification of potential quadruplex forming sequences
Created: 2016
Czech title
pqsfinder: R/Bioconductor balíček pro identifikaci sekvencí tvořících kvadruplexy
Type
software
License
Use of the result by another entity is possible without acquiring a license in some cases
License Fee
The licensor does not require a license fee for the result
Authors
Hon Jiří, Ing., Ph.D.
Lexa Matej, Ing., Ph.D. (DCSY)
Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Zendulka Jaroslav, doc. Ing., CSc. (UIFS)
Lexa Matej, Ing., Ph.D. (DCSY)
Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Zendulka Jaroslav, doc. Ing., CSc. (UIFS)
Keywords
G-quadruplex; quadruplex; DNA; R; Bioconductor; pattern matching; searching; annotation
Description
The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.
Location
License Conditions
Free software under the terms of BSD license (see http://www.opensource.org/licenses/bsd-license.php).
Projects
Výzkum pokročilých metod ICT a jejich aplikace, BUT, Vnitřní projekty VUT, FIT-S-14-2299, start: 2014-01-01, end: 2016-12-31, completed
Departments