Identification of palindrome-forming sequences

Identifikace sekvencí tvořících palindromatické struktury

software

Use of the result by another entity is possible without acquiring a license in some cases

The licensor does not require a license fee for the result

Martínek Tomáš, doc. Ing., Ph.D. (DCSY)
Lexa Matej, Ing., Ph.D. (DCSY)

Palindrome, DNA, dynamic programming.

This software is focused on detection of specific secondary structures forming palindromes in DNA. The program is based on dynamic programming technique. In comparison to other approaches it is able to detect palindromes  with defects in form of character insertion, deletion and substitution.

By downloading this software (see also the link above) the user expresses agreement with the license terms.

http://www.fit.vutbr.cz/research/view_product.php?id=195&notitle=1

Free software under the terms of BSD license (see http://www.opensource.org/licenses/bsd-license.php).

• gz paldpl.tar.gz 4 kB

In vitro and in silico identification of non-canonical DNA structures in genomic sequences, GACR, Standardní projekty, GA204/08/1560, start: 2008-04-01, end: 2010-12-31, completed
Security-Oriented Research in Information Technology, MŠMT, Institucionální prostředky SR ČR (např. VZ, VC), MSM0021630528, start: 2007-01-01, end: 2013-12-31, running

Faculty of Information Technology (FIT)