Matej Lexa

Publications

• 2020

  LABUDOVÁ, D.; HON, J.; LEXA, M. pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm. BIOINFORMATICS, 2020, vol. 36, no. 8, p. 2584-2586. ISSN: 1367-4803. Detail

• 2018

  TOKAN, V.; PUTEROVÁ, J.; LEXA, M.; KEJNOVSKÝ, E. Quadruplex DNA in long terminal repeats in maize LTR retrotransposons inhibits the expression of a reporter gene in yeast. BMC GENOMICS, 2018, vol. 19, no. 1, p. 1-11. ISSN: 1471-2164. Detail

• 2017

  HON, J.; LEXA, M.; MARTÍNEK, T.; ZENDULKA, J. pqsfinder: imperfection-tolerant identification of potential quadruplex-forming sequences in R. ISMB/ECCB 2017. Praha: 2017. p. 0-0. Detail

  HON, J.; MARTÍNEK, T.; ZENDULKA, J.; LEXA, M. pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R. BIOINFORMATICS, 2017, vol. 33, no. 21, p. 3373-3379. ISSN: 1367-4803. Detail

• 2016

  BRÁZDOVÁ, M.; TICHÝ, V.; HELMA, R.; BAŽANTOVÁ, P.; POLÁŠKOVÁ, A.; KREJČÍ, A.; PETR, M.; NAVRÁTILOVÁ, L.; TICHÁ, O.; NEJEDLÝ, K.; BENNINK, M.; SUBRAMANIAM, V.; BÁBKOVÁ, Z.; MARTÍNEK, T.; LEXA, M.; ADÁMIK, M. p53 Specifically Binds Triplex DNA In Vitro and in Cells. PLOS ONE, 2016, vol. 11, no. 12, p. 1-25. ISSN: 1932-6203. Detail

• 2014

  LEXA, M.; MARTÍNEK, T.; BRÁZDOVÁ, M. Uneven distribution of potential triplex sequences in the human genome: In silico study using the R/Bioconductor package triplex. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. Angers: SciTePress - Science and Technology Publications, 2014. p. 80-88. ISBN: 978-989-758-012-3. Detail

  LEXA, M.; ŠTEFLOVÁ, P.; MARTÍNEK, T.; VORLÍČKOVÁ, M.; VYSKOT, B.; KEJNOVSKÝ, E. Guanine quadruplexes are formed by specific regions of human transposable elements. BMC GENOMICS, 2014, vol. 15, no. 1032, p. 1-12. ISSN: 1471-2164. Detail

• 2013

  BRÁZDOVÁ, M.; MARTÍNEK, T.; LEXA, M. In silico search for secondary structures in p53 target genes using R/Bioconductor. ITAT 2013: Information Technologies - Applications and Theory. Donovaly: CreativeSpace Independent Publishing Platform, 2013. p. 42-46. ISBN: 978-1-4909-5208-6. Detail

  HON, J.; MARTÍNEK, T.; RAJDL, K.; LEXA, M. Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences. BIOINFORMATICS, 2013, vol. 29, no. 15, p. 1900-1901. ISSN: 1367-4803. Detail

• 2011

  LEXA, M.; MARTÍNEK, T.; BURGETOVÁ, I.; KOPEČEK, D.; BRÁZDOVÁ, M. A dynamic programming algorithm for identification of triplex-forming sequences. BIOINFORMATICS, 2011, vol. 27, no. 18, p. 2510-2517. ISSN: 1367-4803. Detail

  MARTÍNEK, T.; LEXA, M. Architecture Model for Approximate Tandem Repeat Detection. 22nd IEEE International Conference on Application-specific Systems, Architectures and Processors. Santa Monica, California: IEEE Computer Society, 2011. p. 239-242. ISBN: 978-1-4577-1290-6. Detail

• 2010

  BURGETOVÁ, I.; ZENDULKA, J.; LEXA, M. Clustering Techniques for Protein Fragments Analysis. Brno: Faculty of Information Technology BUT, 2010. 102 p. ISBN: 978-80-214-4207-8. Detail

  BURGETOVÁ, I.; ZENDULKA, J.; LEXA, M. Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments. In Information Technology in Bio- and Medical Informatics, ITBAM 2010. Lecture Notes in Computer Science. Heidelberg: Springer Verlag, 2010. p. 94-101. ISBN: 978-3-642-15019-7. Detail

  MARTÍNEK, T.; LEXA, M. Hardware Acceleration of Approximate Tandem Repeat Detection. IEEE Symposium on Field-Programmable Custom Computing Machines. Charlotte: IEEE Computer Society, 2010. p. 79-86. ISBN: 978-0-7695-4056-6. Detail

• 2009

  MARTÍNEK, T.; LEXA, M.; VOŽENÍLEK, J. Architecture model for approximate palindrome detection. In 2009 IEEE Symposium on Design and Diagnostics of Electronic Circuits and Systems. Liberec: IEEE Computer Society, 2009. p. 90-95. ISBN: 978-1-4244-3339-1. Detail

• 2008

  MARTÍNEK, T.; LEXA, M. Hardware Acceleration of Approximate Palindromes Searching. In The International Conference on Field-Programmable Technology. Taipei: IEEE Computer Society, 2008. p. 65-72. ISBN: 978-1-4244-2796-3. Detail

• 2007

  LEXA, M.; MARTÍNEK, T.; BECK, P.; FUČÍK, O.; VALLE, G.; ZARA, I. Genomic PCR simulation with hardware-accelerated approximate sequence matching. In 21st European Conference on Modelling and Simulation. Praha: European Council for Modelling and Simulation, 2007. p. 333-338. ISBN: 978-0-9553018-2-7. Detail

  MARTÍNEK, T.; LEXA, M.; BECK, P.; FUČÍK, O. Automatic Generation of Circuits for Approximate String Matching. In 2007 IEEE Design and Diagnostics of Electronic Circuits and Systems. Krakow: IEEE Computer Society, 2007. p. 203-208. ISBN: 1-4244-1161-0. Detail

• 2006

  MARTÍNEK, T.; LEXA, M.; KOŘENEK, J.; FUČÍK, O. A flexible technique for the automatic design of approximate string matching architectures. In Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop. Praha: IEEE Computer Society, 2006. p. 83-84. ISBN: 1-4244-0184-4. Detail